Ensembl 72 has been released!

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What’s new in e!72?

  • Updated patches for the human assembly (GRCh37.p11)
  • New variation citation page and individual genotype search box
  • Addition of phenotype association data from OMIM and Orphanet as well as data from the GIANT and MAGIC association studies.
  • Imported HGMD-PUBLIC data from release 2013.1 with regulatory data for human.
  • Import of COSMIC version 64 and update of COSMIC structural variants
  • Updated HAVANA manual curation for human and mouse.
  • Import of the genotypes from the Mouse Genomes Project, SNP Release Version 3.
  • Updated CCDS sets and cDNA alignments for human and mouse.
  • Addition of variation data for gibbon.
  • Updated mitochondrial sequence and annotation for several species including alpaca, lamprey, platyfish and xenopus.

New variation citation page and search box

Variation citation

We have added a new page listing the publications where a variation has been cited. This information can also be retrieved in the new variation citation filter and attribute section of the Variation mart.

individual genotypes search box

 

A form to search an individual is now available in the “Individual genotypes” page located on the variation tab.

Upload VEP output

VEP upload

We have added the ability to upload a VEP output file to the website through the standard upload form. This allows you to re-upload previously calculated consequences, whether from a previous run of the VEP online tool that you have deleted from the website, or an output file from the standalone script (subject to our usual 5MB upload limit).

A complete list of the changes can be found on the Ensembl website