What’s coming in Ensembl release 84

Ensembl 84 is scheduled for March 2016 and includes:

Updated gene sets and annotations

  • Human: Incorporation of Blueprint epigenome data and methylation data
  • Mouse: update to GENCODE M9 annotation
  • Zebrafish: updated gene set, including manually annotated HAVANA annotation and RNAseq data update
  • Cow: ncRNA data update and transcriptomic data update
  • Baboon: lincRNA model update

Variation data imports and updates

  • Phenotype data updated for several species including human, mouse, rat, zebrafish and pig
  • Latest sequence variants from dbSNP build 146 for human, cow and dog
  • HGMD data update
  • Import of COSMIC 75 cancer data
  • New and updated studies from DGVa for several species such as human, mouse, zebrafish, macaque, cow and dog

Other highlights and data sets

  • Pairwise LD calculation on LD variant page
  • Alignments in CRAM format
  • Track hub registry interface
  • Gene trees: new option to prune by target species/ taxon
  • DAS support ended
  • Regulatory segments retired from the Ensembl regulation Biomart, but now available in bigbed format through the ftp site

For more details on the declared intentions, please visit our Ensembl admin site. Please note that these are intentions and are not guaranteed to make it into the release.