Sign up for our virtual series covering the Ensembl genome browser and accessing Ensembl data via its REST API. Both workshops will be held from Tuesday to Thursday, with the browser course running from 10th to 12th October and the REST API course from 17th to 19th July (09:00 – 12:00 BST). Read on for more information and how to register.
Continue readingTag: REST API
Free Ensembl Browser and REST API virtual workshops in July
Sign up for our virtual series covering the Ensembl genome browser and accessing Ensembl data via its REST API. Both workshops will be held from Tuesday to Thursday, with the browser course running from 11th to 13th July and the REST API course from 18th to 20th July (14:00 – 17:00 BST). Read on for more information and how to register.
Continue readingChanges to endpoints of Ensembl Compara APIs in release 110
We have made a number of changes in Ensembl Compara Perl API and REST API endpoints. These changes allow Ensembl to handle non-unique member stable IDs when retrieving comparative genomics data via the APIs. These changes will come into effect in Ensembl release 110 and all old endpoints will be retired in release 112. Please continue reading if you regularly retrieve comparative genomics data via the Ensembl APIs.
Continue readingCool stuff Ensembl VEP can do: Using Gene Ontology annotations to understand gene function
Ensembl VEP maps your variants to genes but what do those genes do?
The Gene Ontology (GO) annotates genes with molecular function, the cellular location in which the gene product functions and the biological process in which the gene product is involved. In addition to phenotype association information, which is only available for a few genes, we now show GO annotations to help guide variant prioritisation by providing an indication of the functionality a variant may affect.
Continue readingWhat’s coming in Ensembl 110 / Ensembl Genomes 57?
Ensembl 110 and Ensembl Genomes 57 are expected to be released in May 2023 July 2023. Find out what’s coming in the new release, although we cannot guarantee everything listed here will make it into the final release.
New interactions display on Ensembl gene pages
In Ensembl release 109, we introduce a new display that integrates experimentally verified interactions between genes, proteins, mRNA or other small molecules onto our gene pages. This adds an additional layer of data that enables deeper analysis into the ways species interact in a variety of contexts. So far, we have imported curated interactions from PHI-base, HPIDB, and PlasticDB for which we could find exact protein matches in Ensembl.
Continue readingWhat’s coming in Ensembl release 109 / Ensembl Genomes 56?
Ensembl 109 and Ensembl Genomes 56 are expected in February 2023. Check out what we’re up to, although we can’t guarantee everything listed here will make it into the final release.
Continue readingFree Ensembl Browser and REST API virtual workshops in November
Virtual series covering the genome browser and the REST API. Both workshops will be held between Tuesday – Thursday, with the Browser on 15th – 17th November and the REST API on 22nd – 24th November 2022 (9am-12pm GMT). Read on for more information and registration instructions.
Continue readingDecommissioning of eQTL REST API endpoints in Ensembl release 105
The Ensembl eQTL API endpoints on Rest.ensembl.org will be replaced by the eQTL catalogue API in the new Ensembl release 105.
Continue readingFree Ensembl Browser and REST API virtual workshops in December
Sign up for our recurring virtual series covering the genome browser and the REST API. Both workshops will be held between Tuesday – Thursday, with the Browser on 7th-9th December and the REST API on 14th-16th December 2021 (9am-12pm GMT). Read on for more information and registration instructions.
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