The AlphaFold AI system developed by DeepMind predicts a protein’s 3D structure from its amino acid sequence. You can now view variant locations on AlphaFold predicted structures in the Ensembl VEP web tool.
Continue readingTag: protein
Cool stuff Ensembl VEP can do: protein annotations from neXtProt
Together with the neXtProt team, we’ve created a plugin for the command-line VEP tool to retrieve and report information about the protein location of missense and stop gained variants.
Continue readingGene and protein families retiring
As of release 102, we will be removing the gene and protein family analysis from Ensembl. Information on related genes within and between species is still provided by our gene trees, homologues and alignments.
Continue reading