Ensembl Genomes release 29 is out!

Ensembl Genomes release 29 is out!

What is new? Pairwise alignments for more than 50 plant genomes including potato and tomato, cacao and grape, and several Oryza sp Newly available genomes from INSDC into our ever expanding Protists and Fungi divisions Cross-references of genes in Fungi and Protists Continue reading Ensembl Genomes release 29 is out!

Second update of the Ensembl GRCh37 site

The second update of the GRCh37 archive site has now been released. Some of the data imports and updates for this release include: dbSNP144 human data including data from the Exome Aggregation Consortium (ExAC) Public HGMD data (version 2015.2) Phenotype Continue reading Second update of the Ensembl GRCh37 site

What’s coming in Ensembl release 82

Ensembl 82 is scheduled for September 2015 and includes: Updated gene sets and annotations Human variation data updates to dbSNP (144) including variants from the Exome Aggregation Consortium (ExAC) Mouse: updated to GENCODE M7 annotation Zebrafish: RNASeq data from developmental stages Other Continue reading What’s coming in Ensembl release 82

Ensembl Genomes release 28 is out!

Ensembl Genomes release 28 is out!

What is new? Software update: now version 81 of the Ensembl project for all our 23,636 genomes from 4,991 species Annotation update: Schizosaccharomyces pombe genes based on version 53 of PomBase Chado MySQL databases for release 18 are no longer available Protein domains for Continue reading Ensembl Genomes release 28 is out!

What’s coming in Ensembl release 81

Ensembl 81 is scheduled for July 2015. Highlights include: Updated gene sets and annotations Human: updated to GENCODE 23 including manually annotated HAVANA annotation, with the new assembly patches (GRCh38.p3) Mouse: updated to GENCODE M6 including HAVANA annotation with the Continue reading What’s coming in Ensembl release 81

1000 Genomes phase 3 frequencies, genotypes and LD data

1000 Genomes phase 3 frequencies, genotypes and LD data

Ensembl Variation recently incorporated the latest versions of the dbSNP and 1000 Genomes datasets. While we are able to import all of the variant loci from phase 3 of the 1000 Genomes project, the vast amount of genotype data (2500 Continue reading 1000 Genomes phase 3 frequencies, genotypes and LD data