For May we have the following Ensembl events:

29 April – 1 May: Ensembl Developers workshop at the University of Cambridge, Cambridge, UK
8 May: Browser workshop at Imperial College, London, UK
11-13 May: Ensembl module in the Wellcome Trust Open Door Workshop – Working with the Human Genome Sequence, Hinxton, UK
11-15 May: Ensembl module in the EBI hands-on training A walktrough EBI Bioinformatics Resources, Hinxton, UK
12-13 May: Ensembl module in the EBI roadshow at the Université Victor Segalen Bordeaux 2, Bordeaux, France
19-21 May: Ensembl module in the EBI roadshow at the Universidade de Santiago de Compostela, Santiago de Compostela, Spain
22 May: Browser workshop at the European Human Genetics Conference, Vienna, Austria
26 May: Ensembl Developers workshop at the VIB Flanders Interuniversity Institute of Biotechnology, Ghent, Belgium
27-28 May: Browser workshop at the Erasmus MC Molecular Medicine Postgraduate School, Rotterdam, The Netherlands

For details about these and other upcoming events, please have a look at the complete list of Ensembl training events.

Though the overall response has been good, a few Ensembl users are finding it difficult to switch from the old interface to the new browser launched Nov, 2008. For those users, functionality has not been lost. You should still be able to do the same tasks as before in a faster interface.

We will post a series of tips to show you how to make the switch from the old interface to the new. If you still have trouble, please watch our video tutorial: Browsing Ensembl.

TIP: I want to use ExonView. Where is this now?

To view the full genomic sequences, exons and introns, go to any transcript. (Exons are transcript information. To see the exons page, go to a transcript tab, not the gene tab.) Click on the ‘Exons‘ link under ‘Sequence’ at the left of any transcript page.

To show the full introns, click on ‘Configure this page‘ at the left. Select ‘Show full intronic sequence’. Click ‘Save and Close’ at the top right corner of the menu window.

Still can’t find what you’re looking for? Email us.

For April we have the following Ensembl events:

31 March – 1 April : Browser workshop at the IGC, Oeiras, Portugal
2-3 April: Ensembl Developers workshop at the IGC, Oeiras, Portugal
16 April: Demo for the National Genetics Reference Lab, Manchester, UK
17 April: Browser workshop at Imperial College, London, UK
22 April: Browser workshop at Imperial College, London, UK *postponed to 8 May*
27-29 April: Ensembl module in the EBI roadshow at the University of Iceland, Reykjavik, Iceland
27-29 April: BioMart module in the EBI hands-on training Programmatic Access to Biological Databases (Java), Hinxton, UK
29 April – 1 May: Ensembl Developers workshop at the University of Cambridge, Cambridge, UK

For details about these and other upcoming events, please have a look at the complete list of Ensembl training events.

In March, explore Ensembl in the following events:

1-3: Presentation at the EURATools Annual meeting in Barcelona
5,6: Browser workshop at the Department of Genetics in Cambridge, UK
10: Browser workshop in Leuven, Belgium
13: Browser workshop at the Faculty of Science, Montevideo, Uruguay
16-19: Ensembl Module in the Open Door Workshop, Montevideo, Uruguay
19: Demo at the Bioinformatics Course, National Genetics Reference Lab, Manchester, UK
20: Browser workshop at the Max Delbrück Center in Berlin, Germany
31: Browser workshop at King’s College, London, UK
31 March, 1 April : Demo and Browser Workshop at the IGC Oeiras, Portugal
2,3 April: Ensembl API workshop at the IGC, Oeiras, Portugal

Check out microorganisms at Ensembl genomes featured in the EBI ‘Sequence to Genes‘ Workshop, EBI, Hinxton, UK

For details about these and other upcoming workshops, please have a look at the complete list of Ensembl training events.

In February we will have the following Ensembl workshops:

10 Feb: Browser workshop at the Institute for Animal Health in Pirbright
11 Feb: Browser workshop at the Institute of Molecular Genetics in Prague, Czech Republic
12 Feb: Developers workshop at the Institute of Molecular Genetics in Prague, Czech Republic
23 Feb: Ensembl module in the EBI Roadshow at the Cyprus Institute of Neurology & Genetics in Nicosia, Cyprus
24-25 Feb: Developers workshop at the e-Science Centre in Edinburgh
26 Feb: Browser workshop at the Institute for Animal Health in Compton

For details about these and other upcoming workshops, please have a look at the complete list of Ensembl training events.

Happy Holidays, and Happy New Year from Ensembl!

The new year will start with some workshops given by our Outreach team on how to use our new interface (and the data behind the scenes!). We hope you have had time to explore and learn the layout! Remember to send any questions to our helpdesk.

Upcoming workshops in January, 2009:

11 Jan Ensembl Demo at the PAG XVII conference, San Diego, CA, USA
13-14 Ensembl 2-day browser workshop at the Universidad de Chile, Santiago, Chile
15-16 Modules in the EBI Bioinformatics Roadshow, UCLA, USA
19-20 Modules in the EBI Bioinformatics Roadshow, City of Hope, USA
22-23 Modules in the EBI Bioinformatics Roadshow, UCSF, USA
24 Browser course in the Computational Biology Workshop, Sultan Qaboos University, Muscat, Oman
26 Browser course in the 9th BioSapiens European School of Bioinformatics, Brussels, Belgium

That’s all for now!

There are still a few more Ensembl training events before the end of the year.

Browser workshops:

UNAM, Mexico City, Mexico (1-2 Dec)
UNAM, Cuernavaca, Mexico (5 Dec) (+ departmental seminar 4 Dec)

Amsterdam, The Netherlands (19 Dec)

Developers workshop:

University of Cambridge, UK (1-3 Dec)

In addition, Ensembl will feature as part of the following courses:

Wellcome Trust Open Door Workshop ‘Working with the Human Genome Sequence’ (1-2 Dec, Hinxton, Cambridge, UK) and Genes en evolución, ecologia e conservación (8-9 Dec, La Paz, Baja California, Mexico)

For details of these workshops, please have a look at the complete list of Ensembl training events.

Ensembl is attending the 22nd International Mammalian Genome Conference taking place in Prague (Czech Republic) from 2-5 November 2008. This meeting starts with three bioinformatics workshops on Sunday (2nd November) at the Institute of Molecular Genetics (AS CR). One of these workshops will focus on Ensembl, discussing new developments and featuring a preview of our new interface. We will be starting a 9:00 (Seminar Room 3.102, in the third floor). You can download the workshop materials here (exercises and tutorials). As part of our commitment with the EURATools consortium, we’ll be focusing on rat genomics, but if you work with any other species annotated in Ensembl, you are welcome.
See you in Prague!

Only 3 continents to cover this time, but November will be even busier for the Ensembl trainers than October ….

Ensembl will feature as part of the following courses:

‘Computational & Comparative Genomics’ (5-11 Nov, Cold Spring Harbor Laboratory, New York, US)
Wellcome Trust Open Door Workshop ‘Working with the Human Genome Sequence (10-12 Nov, Wellcome Trust Genome Campus, Hinxton, UK)
Hands-on training at EBI ‘Programmatic access in Java: webservices & work flows’ (24-27 Nov, Wellcome Trust Genome Campus, Hinxton, UK)

Browser workshops will be given at the following locations:

Europe:
Prague, Czech Republic (2 Nov)
Madrid, Spain (5 Nov)
Newcastle, UK (13 Nov)
Cambridge, UK (13-14 Nov)
Naples, Italy (19 Nov)

North America:
Cambridge, Massachusetts, US (12 Nov & 14 Nov)
Boston, Massachusetts, US (13 Nov)

Asia:
Kuala Lumpur, Malaysia (24-25 Nov)
Sabah, Malaysia (27-28 Nov)

For details of these workshops, please have a look at the complete list of Ensembl training events.

The Ensembl team has been involved in several activities in Hyderabad (India) during the last few days, making the most of the latest HUGO’s 13th Human Genome (HGM2008).

A satellite workshop has been organised within the Open Door Workshop framework at the Centre for Cellular and Molecular Biology (CCMB). Over 40 scientists from different countries had the opportunity to learn about different resources freely available on the Internet, providing us with useful feedback.

Following our presence in the HGM2008 in the EBI booth we had the opportunity to make several contacts that hopefully should allow us to organise a series of workshops around India next year. If you were interested to know more about this, or query about possibilities to host one of our workshops, you can contact us.

Greetings from India भारत से नमस्ते