We’re already gearing up for Ensembl 89, scheduled for May 2017. It’s a slimline release this time, with just a handful of highlights: Updated assemblies, gene sets and annotations Human: updated cDNA alignments Mouse: updated cDNA alignments and update to Ensembl-Havana GENCODE Continue reading What’s coming in Ensembl release 89
The Ensembl regulation resources FTP site saw a facelift in release 87. The directory structures have been modified to make it easier to find files- the file names have become more descriptive and we now also provide our data in a greater variety of Continue reading Regulation FTP resources restructured in Ensembl 87
Continued HapMap variation data access through Ensembl NCBI have recently released plans to immediately retire their HapMap interface, however, data from the HapMap Project will continue to be freely accessible through Ensembl. There is lots of help and documentation as well as video tutorials to help Continue reading Finding HapMap Variation Data in Ensembl
What’s new in e84: Human: Incorporation of BLUEPRINT Epigenome data and methylation data Pairwise Linkage Disequilibrium (LD) calculation on LD variant page Track hub registry interface Transcript haplotype view Incorporation of BLUEPRINT Epigenome data BLUEPRINT is a large scale research Continue reading Ensembl 84 has been released!
Ensembl 84 is scheduled for March 2016 and includes: Updated gene sets and annotations Human: Incorporation of Blueprint epigenome data and methylation data Mouse: update to GENCODE M9 annotation Zebrafish: updated gene set, including manually annotated HAVANA annotation and RNAseq data update Continue reading What’s coming in Ensembl release 84