What’s coming in Ensembl release 85

Ensembl 85 is scheduled for July 2016, highlights include: Updated gene sets and annotations Human: updated to GENCODE release 25, new CCDS import Mouse: updated to GENCODE release M10, Rat: updated Ensembl/HAVANA gene set Vega 65 annotation added for human, mouse Continue reading What’s coming in Ensembl release 85

Ensembl Genomes 31 has been released!

Ensembl Genomes 31 has been released!

What’s new in Ensembl Genomes 31? There are legs and tentacles everywhere in this release of Ensembl Metazoa, as ten new species scuttle, swim and slither into our databases. From the Antarctic midge to the California two-spot octopus, the new species illustrate the diversity of Continue reading Ensembl Genomes 31 has been released!

Ensembl 84 has been released!

Ensembl 84 has been released!

What’s new in e84: Human: Incorporation of BLUEPRINT Epigenome data and methylation data Pairwise Linkage Disequilibrium (LD) calculation on LD variant page Track hub registry interface Transcript haplotype view Incorporation of BLUEPRINT Epigenome data BLUEPRINT is a large scale research Continue reading Ensembl 84 has been released!

What’s coming in Ensembl release 84

Ensembl 84 is scheduled for March 2016 and includes: Updated gene sets and annotations Human: Incorporation of Blueprint epigenome data and methylation data Mouse: update to GENCODE M9 annotation Zebrafish: updated gene set, including manually annotated HAVANA annotation and RNAseq data update Continue reading What’s coming in Ensembl release 84

Ensembl Genomes release 30 is out!

Ensembl Genomes release 30 is out!

What is new? Molecular and biological information from PHI-base (version 4.0) for thousands of genes in Protists, Bacteria and Fungi that are involved in pathogen-host interactions Small non-coding RNA genes in the diatom Phaeodactylum tricornutum (Rogato et al. 2014) Software update: version 83 of the Ensembl Continue reading Ensembl Genomes release 30 is out!

Ensembl Genomes release 29 is out!

Ensembl Genomes release 29 is out!

What is new? Pairwise alignments for more than 50 plant genomes including potato and tomato, cacao and grape, and several Oryza sp Newly available genomes from INSDC into our ever expanding Protists and Fungi divisions Cross-references of genes in Fungi and Protists Continue reading Ensembl Genomes release 29 is out!

Second update of the Ensembl GRCh37 site

The second update of the GRCh37 archive site has now been released. Some of the data imports and updates for this release include: dbSNP144 human data including data from the Exome Aggregation Consortium (ExAC) Public HGMD data (version 2015.2) Phenotype Continue reading Second update of the Ensembl GRCh37 site