What’s new in e83: Human: gene set updated to GENCODE 24, and new assembly patches (GRCh38.p5) Manhattan plot track for LD Advanced Filtering and Counts on Variant table Minor allele frequency (MAF) filter on sequence mark-up views Human gene set Continue reading Ensembl 83 has been released!
What’s new in e82: Ensembl mobile website Support of VEP Plugins through the web interface, script and REST Improved Variation tables RNASeq data set of Zebrafish developmental stages Marking a region on images LastZ replaced TBlat for pairwise alignments Ensembl mobile Continue reading Ensembl 82 has been released!
What’s new in e81: Human: updated to GENCODE 23 including manually annotated HAVANA annotation, with the new assembly patches (GRCh38.p3) Mouse and zebrafish clone tracks New mouse regulatory build Transcript sequence markup Human gene set update and new assembly patches The Continue reading Ensembl 81 has been released!
BiomaRt is a Bioconductor package that make accessing and retrieving Ensembl data from the R software very easy. The recent Bioconductor 3.1 release includes a new version of BiomaRt packed with many new Ensembl friendly functions allowing you to connect Continue reading BiomaRt or how to access the Ensembl data from R
What’s new in e80: 1000 Genomes phase 3 and dbSNP build 142 studies imported for human Gene Expression Atlas Widget Updated zebrafish and rat gene annotation based on the GRCz10 and Rnor_6.0 assemblies respectively Track label improvement New user data track type: long-range interactions Continue reading Ensembl 80 has been released!
Ensembl 80 is scheduled for May 2015. Highlights include: Variation data imports and updates 1000 Genomes phase 3 studies will be imported for human Variant locations will be added from the ExAC project The latest sequence variants will be imported from: Continue reading What’s coming in Ensembl release 80
After running our brand new Ensembl Regulatory Build on the human GRCh38 and GRCh37 assemblies, we spent some time revamping our current Regulation mart to make it faster, easier to use and pack it with brand new features. A complete re-design of the mart has Continue reading Say hello to the new Regulation mart
Ensembl 79 is scheduled for March 2015. Highlights include: Updated gene sets and annotations Human GENCODE release 22 (GRCh38.p2): An updated version of the GENCODE gene set, which combines Havana’s manual annotation and Ensembl’s evidence-based automatic annotation, will be released Assembly Continue reading What’s coming in Ensembl release 79
What’s new in e!77? Updated human gene set (GENCODE 21) Updated rat gene set including manual annotation from HAVANA New species: Vervet-African green monkey Imported Transcript Support Levels (TSLs) from UCSC for human and mouse Imported APPRIS flag for human and mouse Updated Amazon molly gene set Imported Transcript Support Continue reading Ensembl 77 has been released!
What’s new in e!76? Updated human assembly to GRCh38 (GENCODE 20) Updated mouse gene set (GENCODE M3) New BLAST/BLAT New Regulation displays Improved sequence export New species: Amazon molly and Olive baboon New human assembly – GRCh38 We’re excited to release Continue reading Ensembl 76 has been released!