What’s New in e86:
Mouse strain genomes
In Ensembl 86, you will now be able to view the annotated genome assemblies, variation data and comparative analyses of 16 different mouse strains, produced by the Mouse Genomes Project. While the GRCm38 assembly (produced from Mus musculus strain C57BL/6J) remains the reference assembly, variants and comparative analyses for the other strains can be viewed through the Gene tab and the Location tab. You can find the gene trees and orthologue/paralogue predictions for the mouse strains through the Strains option in the menu in the Gene tab. The mouse strain gene tree depicts the evolutionary history of genes (left) and protein alignment (right) for the individual mouse strains and rat. You can find the variants between these mouse strains through the Strain table option in the menu in the Location tab. The strain table displays the alleles identified at variant positions across the 16 mouse strains.
Updated assemblies, gene sets and annotations
In Ensembl 86, there will also be a number of updates to the assemblies and gene sets for a number of different species:
- Human: updated cDNA alignments and RefSeq import
- Mouse: updated cDNA alignments and RefSeq import
- Zebrafish: updated gene set and RefSeq import
- Chicken: updated to the Galgal_5.0 assembly
- Mouse lemur: updated to the Mmur_2.0 assembly
- Macaque: updated to the Mmul_8.0.1 assembly
New lincRNA data
New Mobile Site Views
As of release 86, you can now view transcripts on the mobile version of Ensembl. You can also view exon sequence, cDNA sequence and protein sequence by clicking on the lefthand arrow.
The gene sequence is also now available to view on mobile devices. Just go to any gene page and click on the left hand arrow and then choose sequence.
- Variation and phenotype databases updated
- You can now select ‘Manhattan plot’ as an option when configuring bigWig files
A complete list of the changes can be found on the Ensembl website.
Find out more about the new release and ask the team questions, in our free webinar: Tuesday 11th October, 4pm BST. Register here.