Author: Emily (Outreach)
Some Variant Effect Predictor (VEP) jobs are small, just ten or fewer variants, and that’s easy. Some VEP jobs are big, if you do variant calling on one whole human genome, that’s five million variants! The more variants you have, the more computing power the VEP needs to process them, which can make it slow. But there are ways to speed it up.
The VEP (Variant Effect Predictor) is our most popular tool and is incredibly useful for annotating genetic variants with the genes they hit and what effect they have on them. But did you know you can filter your results? Both in the web interface and using the script?
We think conferences are great opportunities to use talks and posters to tell people about all the cool stuff we’re developing, provide training with workshops and learn more about what’s going on in our fields of interest. Ensembl team members attend many conferences a year and 2018 is no exception, we’re planning to attend twenty (so far)!
This month we’re meeting Carla from our comparative genomics team (which we call compara).
We’re holding an Ensembl Perl API course at the Genome Campus in the UK in April. The course give you chance to learn how to access the database directly from the people who produce the databases and write the APIs themselves. It is aimed at bioinformaticians and wet-lab scientists who are familiar with Object Oriented Perl.
This four-day course costs only £140, which includes daily transport to the campus from Cambridge city centre and refreshments (the fee is to cover only these expenses).
Please visit the course page for more details on the content and how to apply.
This December, we’re meeting Thomas Juettemann, who is part of our Regulation team.Continue reading
We’re always looking to improve Ensembl to make your research easier. To do this, we’re looking to find out more about you, how you use Ensembl and what you find useful or would like to see improved. The survey should take no more than 10 min. If you’d like to help make Ensembl better, please click on the link below: