File Chameleon, easily transform Ensembl FTP files

File Chameleon, easily transform Ensembl FTP files

Transforming file formats has always been a troublesome issue in bioinformatics because of the numerous standards and slight eccentricities in formatting required by some software packages. How many times have you needed to transform chromosome names between 1,2,3 and chr1, Continue reading File Chameleon, easily transform Ensembl FTP files

Regulation FTP resources restructured in Ensembl 87

The Ensembl regulation resources FTP site saw a facelift in release 87. The directory structures have been modified to make it easier to find files- the file names have become more descriptive and we now also provide our data in a greater variety of Continue reading Regulation FTP resources restructured in Ensembl 87

New zebrafish developmental RNA-seq data in Ensembl

New zebrafish developmental RNA-seq data in Ensembl

For our latest release (e87) we’ve produced annotations from some new embryonic zebrafish RNA-seq data using the Ensembl genebuild RNA-seq pipeline. The collection of new data we’re providing consists of gene sets and alignments for 18 separate embryonic developmental stages, from the single Continue reading New zebrafish developmental RNA-seq data in Ensembl

Ensembl genomes 33 is out!

What’s new? Ensembl Plants takes centre stage in the release of Ensembl Genomes 33, with a variety of new data available for a number of different species: Incorporation of the Araport 11 gene model annotation for Arabidopsis thaliana Addition of mitochondrial and Continue reading Ensembl genomes 33 is out!